Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| orotidine-5'-phosphate decarboxylase | SAMN05421757_105355 | Not Available | Negative | 3241465 - 3242193 | 25029.2 |
| atp-dependent clp protease atp-binding subunit clpb | SAMN05421757_105356 | Not Available | Positive | 3242493 - 3245108 | 95610.1 |
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN05421757_105357 | Not Available | Negative | 3245260 - 3245745 | 16453.8 |
| sulfoxide reductase catalytic subunit yedy | SAMN05421757_105358 | Not Available | Positive | 3246076 - 3247005 | 34475.9 |
| sulfoxide reductase heme-binding subunit yedz | SAMN05421757_105359 | Not Available | Positive | 3247202 - 3247828 | 23706.1 |
| hypothetical protein | SAMN05421757_105360 | Not Available | Positive | 3247907 - 3248941 | 38643.9 |
| hypothetical protein | SAMN05421757_1061 | Not Available | Negative | 3249273 - 3249527 | 9491.07 |
| serine/threonine protein kinase | SAMN05421757_1062 | Not Available | Positive | 3249637 - 3251046 | 53169.4 |
| fha domain-containing protein | SAMN05421757_1063 | Not Available | Positive | 3251081 - 3252517 | 50688.5 |
| serine/threonine protein phosphatase prpc | SAMN05421757_1064 | Not Available | Positive | 3252483 - 3253436 | 34192.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
