Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-alanine dehydrogenase | SAMN05421757_105345 | Not Available | Negative | 3232641 - 3233759 | 38636.4 |
| transcriptional regulator, asnc family | SAMN05421757_105346 | Not Available | Positive | 3233913 - 3234374 | 16969.6 |
| hemolysin-type calcium-binding repeat-containing protein | SAMN05421757_105347 | Not Available | Negative | 3234417 - 3236237 | 64928.7 |
| lsu ribosomal protein l36p | SAMN05421757_105348 | Not Available | Negative | 3236490 - 3236615 | 5055.35 |
| Trna-val | Not Available | Not Available | Positive | 3236695 - 3236769 | Not Available |
| n-formylglutamate amidohydrolase | SAMN05421757_105350 | Not Available | Positive | 3236928 - 3237791 | 31448.8 |
| dna polymerase-4 | SAMN05421757_105351 | Not Available | Negative | 3238061 - 3239314 | 46002.4 |
| 8-oxo-dgtp diphosphatase | SAMN05421757_105352 | Not Available | Positive | 3239484 - 3239945 | 17001.2 |
| spfh domain, band 7 family protein | SAMN05421757_105353 | Not Available | Positive | 3240087 - 3240977 | 32341.0 |
| hypothetical protein | SAMN05421757_105354 | Not Available | Positive | 3240977 - 3241264 | 10132.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
