Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa c-acetyltransferase | SAMN05421757_105325 | Not Available | Positive | 3212848 - 3214008 | 39781.9 |
| gaf domain-containing protein | SAMN05421757_105326 | Not Available | Positive | 3214008 - 3214463 | 16000.1 |
| uncharacterized conserved protein | SAMN05421757_105327 | Not Available | Positive | 3214456 - 3214839 | 13498.9 |
| ribosomal large subunit pseudouridine synthase a | SAMN05421757_105328 | Not Available | Positive | 3214836 - 3215474 | 23410.5 |
| aldehyde dehydrogenase (nad+) | SAMN05421757_105329 | Not Available | Negative | 3215569 - 3217008 | 51502.1 |
| alkyl hydroperoxide reductase subunit ahpc (peroxiredoxin) | SAMN05421757_105330 | Not Available | Positive | 3217170 - 3217826 | 23955.7 |
| hypothetical protein | SAMN05421757_105331 | Not Available | Negative | 3217873 - 3218598 | 25747.2 |
| l,d-transpeptidase catalytic domain | SAMN05421757_105332 | Not Available | Positive | 3218677 - 3219231 | 20478.7 |
| lipoprotein-anchoring transpeptidase erfk/srfk | SAMN05421757_105333 | Not Available | Negative | 3219334 - 3219900 | 20823.1 |
| long-chain acyl-coa synthetase | SAMN05421757_105334 | Not Available | Positive | 3220160 - 3222136 | 74157.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
