Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| large conductance mechanosensitive channel | SAMN05421757_105295 | Not Available | Negative | 3182967 - 3183365 | 14284.5 |
| hypothetical protein | SAMN05421757_105296 | Not Available | Negative | 3183454 - 3183783 | 12291.9 |
| hypothetical protein | SAMN05421757_105297 | Not Available | Positive | 3183890 - 3185065 | 40856.6 |
| glutathione s-transferase | SAMN05421757_105298 | Not Available | Negative | 3185081 - 3185668 | 21836.4 |
| dna polymerase iii, delta subunit | SAMN05421757_105299 | Not Available | Negative | 3185750 - 3186781 | 36681.2 |
| lps-assembly lipoprotein | SAMN05421757_105300 | Not Available | Negative | 3186778 - 3187278 | 17576.5 |
| leucyl-trna synthetase | SAMN05421757_105301 | Not Available | Negative | 3187265 - 3189841 | 95041.8 |
| protein of unknown function | SAMN05421757_105302 | Not Available | Negative | 3189930 - 3190421 | 17679.9 |
| outer membrane protein ompu | SAMN05421757_105303 | Not Available | Positive | 3190661 - 3191737 | 37228.8 |
| tetratricopeptide repeat-containing protein | SAMN05421757_105304 | Not Available | Positive | 3191843 - 3193315 | 54704.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
