Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-d-manno-octulosonic-acid transferase | SAMN05421757_105285 | Not Available | Negative | 3171828 - 3173090 | 44656.7 |
| protein of unknown function | SAMN05421757_105286 | Not Available | Negative | 3173101 - 3173343 | 9145.72 |
| myo-inositol-1(or 4)-monophosphatase | SAMN05421757_105287 | Not Available | Negative | 3173440 - 3174231 | 28714.1 |
| pmba protein | SAMN05421757_105288 | Not Available | Negative | 3174218 - 3175564 | 47110.7 |
| do/deqq family serine protease | SAMN05421757_105289 | Not Available | Positive | 3175715 - 3177115 | 48993.4 |
| vplpa-cterm protein sorting domain-containing protein | SAMN05421757_105290 | Not Available | Positive | 3177214 - 3177846 | 21642.0 |
| 2-octaprenylphenol hydroxylase | SAMN05421757_105291 | Not Available | Positive | 3177995 - 3179674 | 62740.1 |
| hypothetical protein | SAMN05421757_105292 | Not Available | Negative | 3179754 - 3181256 | 52262.8 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN05421757_105293 | Not Available | Positive | 3181569 - 3182324 | 26367.6 |
| enoyl-coa hydratase/carnithine racemase | SAMN05421757_105294 | Not Available | Positive | 3182321 - 3182938 | 21644.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
