Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN05421757_105255 | Not Available | Positive | 3135250 - 3135978 | 27473.0 |
| serralysin | SAMN05421757_105256 | Not Available | Positive | 3136268 - 3138022 | 60413.0 |
| polysaccharide export outer membrane protein | SAMN05421757_105257 | Not Available | Positive | 3138180 - 3139268 | 38324.5 |
| glycosyltransferase, gt2 family | SAMN05421757_105258 | Not Available | Positive | 3139482 - 3140549 | 39995.9 |
| hemolysin-type calcium-binding repeat-containing protein | SAMN05421757_105259 | Not Available | Negative | 3140589 - 3142010 | 49153.4 |
| galactosyltransferase | SAMN05421757_105260 | Not Available | Negative | 3142099 - 3146145 | 148253.0 |
| glycosyl transferase family 2 | SAMN05421757_105261 | Not Available | Negative | 3146231 - 3147598 | 50982.3 |
| udp-galactopyranose mutase | SAMN05421757_105262 | Not Available | Negative | 3147681 - 3148835 | 44162.1 |
| glycosyl transferases group 1 | SAMN05421757_105263 | Not Available | Negative | 3148904 - 3150469 | 58702.3 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421757_105264 | Not Available | Negative | 3150618 - 3152135 | 56082.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
