Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp synthase f1 subcomplex alpha subunit | SAMN05421757_101259 | Not Available | Positive | 293027 - 294565 | 55187.2 |
| f-type h+-transporting atpase subunit gamma | SAMN05421757_101260 | Not Available | Positive | 294583 - 295461 | 31628.1 |
| atp synthase f1 subcomplex beta subunit | SAMN05421757_101261 | Not Available | Positive | 295483 - 296904 | 50278.1 |
| atp synthase f1 subcomplex epsilon subunit | SAMN05421757_101262 | Not Available | Positive | 296914 - 297312 | 13962.5 |
| h-type lectin domain-containing protein | SAMN05421757_101263 | Not Available | Positive | 297446 - 297784 | 12704.8 |
| ribose-phosphate pyrophosphokinase | SAMN05421757_101264 | Not Available | Negative | 297884 - 298894 | 36689.4 |
| 2-hydroxychromene-2-carboxylate isomerase | SAMN05421757_101265 | Not Available | Positive | 299081 - 299677 | 21631.6 |
| methyltransferase domain-containing protein | SAMN05421757_101266 | Not Available | Negative | 299686 - 300321 | 23595.2 |
| l-threonine aldolase | SAMN05421757_101267 | Not Available | Negative | 300410 - 301453 | 37471.5 |
| methyl-accepting chemotaxis sensory transducer with cache sensor | SAMN05421757_101268 | Not Available | Negative | 301532 - 303463 | 69432.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
