Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_11321 | Not Available | Positive | 4829699 - 4829887 | 7343.91 |
| hypothetical protein | SAMN05421757_11322 | Not Available | Positive | 4830049 - 4830225 | 6280.55 |
| Putative repa-like protein | SAMN05421757_11323 | Not Available | Positive | 4830225 - 4831637 | 51864.6 |
| Portal protein | SAMN05421757_11324 | Not Available | Positive | 4831873 - 4833405 | 54131.6 |
| Putative phage endonuclease | SAMN05421757_11325 | Not Available | Positive | 4833396 - 4833734 | 13236.9 |
| Putative major capsid protein | SAMN05421757_11326 | Not Available | Positive | 4833727 - 4835025 | 46247.9 |
| Prohead protease | SAMN05421757_11327 | Not Available | Positive | 4835027 - 4835599 | 20400.2 |
| hypothetical protein | SAMN05421757_11328 | Not Available | Positive | 4835599 - 4836141 | 19856.2 |
| phage portal protein | SAMN05421757_11329 | Not Available | Positive | 4836141 - 4837190 | 37205.6 |
| Attr | Not Available | Not Available | Positive | 4838030 - 4838081 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
