Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, laci family | SAMN05421757_105245 | Not Available | Positive | 3124816 - 3125892 | 39162.9 |
| dolichol-phosphate mannosyltransferase | SAMN05421757_105246 | Not Available | Positive | 3125980 - 3126726 | 26974.1 |
| uncharacterized n-terminal domain of lipid-a-disaccharide synthase | SAMN05421757_105247 | Not Available | Positive | 3126719 - 3127030 | 12025.8 |
| dolichyl-phosphate-mannose-protein mannosyltransferase | SAMN05421757_105248 | Not Available | Positive | 3127002 - 3128498 | 53622.5 |
| exopolysaccharide biosynthesis protein ybjh | SAMN05421757_105249 | Not Available | Positive | 3128658 - 3130781 | 77710.6 |
| group 4 capsule polysaccharide lipoprotein gfcb, yjbf | SAMN05421757_105250 | Not Available | Positive | 3130778 - 3131485 | 25134.9 |
| udp-glucuronate 4-epimerase | SAMN05421757_105251 | Not Available | Positive | 3131548 - 3132561 | 37484.7 |
| hypothetical protein | SAMN05421757_105252 | Not Available | Negative | 3132754 - 3132981 | 7552.67 |
| uncharacterized conserved protein ykwd, contains cap (csp/antigen 5/pr1) domain | SAMN05421757_105253 | Not Available | Negative | 3133132 - 3133797 | 24084.0 |
| udp-glucose dehydrogenase | SAMN05421757_105254 | Not Available | Positive | 3133956 - 3135260 | 46515.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
