Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_105235 | Not Available | Positive | 3117026 - 3118432 | 51357.6 |
| rhomboid family protein | SAMN05421757_105236 | Not Available | Positive | 3118619 - 3119269 | 22924.5 |
| serine/threonine protein phosphatase 1 | SAMN05421757_105237 | Not Available | Positive | 3119266 - 3120048 | 28360.0 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | SAMN05421757_105238 | Not Available | Positive | 3120151 - 3120714 | 20782.5 |
| dtdp-glucose 4,6-dehydratase | SAMN05421757_105239 | Not Available | Positive | 3120718 - 3121758 | 37536.2 |
| dtdp-4-dehydrorhamnose reductase | SAMN05421757_105240 | Not Available | Positive | 3121755 - 3122618 | 29964.3 |
| glucose-1-phosphate thymidylyltransferase | SAMN05421757_105241 | Not Available | Positive | 3122732 - 3123598 | 31905.4 |
| hypothetical protein | SAMN05421757_105242 | Not Available | Positive | 3123848 - 3124093 | 8886.28 |
| hypothetical protein | SAMN05421757_105243 | Not Available | Negative | 3124175 - 3124435 | 9582.37 |
| Trna-arg | Not Available | Not Available | Positive | 3124576 - 3124652 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
