Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna gyrase subunit b | SAMN05421757_105185 | Not Available | Negative | 3067346 - 3069763 | 89050.0 |
| dna replication and repair protein recf | SAMN05421757_105186 | Not Available | Negative | 3069906 - 3071012 | 39380.2 |
| dna polymerase iii, beta subunit | SAMN05421757_105187 | Not Available | Negative | 3071075 - 3072193 | 40232.0 |
| chromosomal replication initiator protein dnaa | SAMN05421757_105188 | Not Available | Negative | 3072299 - 3073756 | 54469.4 |
| ssu ribosomal protein s20p | SAMN05421757_105189 | Not Available | Negative | 3074303 - 3074569 | 9817.94 |
| short chain enoyl-coa hydratase | SAMN05421757_105190 | Not Available | Negative | 3074657 - 3075433 | 28118.3 |
| dna-(apurinic or apyrimidinic site) lyase | SAMN05421757_105191 | Not Available | Negative | 3075498 - 3076349 | 31036.5 |
| 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase /demethylmenaquinone methyltransferase | SAMN05421757_105192 | Not Available | Positive | 3076443 - 3077195 | 28279.6 |
| 2-octaprenylphenol hydroxylase | SAMN05421757_105193 | Not Available | Positive | 3077200 - 3078732 | 56883.7 |
| flagellar basal-body rod modification protein flgd | SAMN05421757_105194 | Not Available | Negative | 3078752 - 3079423 | 23741.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
