Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitt/taut family transport system atp-binding protein | SAMN05421757_105175 | Not Available | Positive | 3052368 - 3053174 | 29135.7 |
| nitt/taut family transport system permease protein | SAMN05421757_105176 | Not Available | Positive | 3053171 - 3054037 | 30704.2 |
| transcriptional regulator, gntr family | SAMN05421757_105177 | Not Available | Positive | 3054072 - 3054761 | 26159.8 |
| maltooligosyl trehalose synthase | SAMN05421757_105178 | Not Available | Negative | 3055040 - 3057238 | 80184.6 |
| maltooligosyl trehalose hydrolase | SAMN05421757_105179 | Not Available | Negative | 3057241 - 3058959 | 62763.6 |
| glycogen operon protein | SAMN05421757_105180 | Not Available | Negative | 3058952 - 3060985 | 75478.0 |
| heme oxygenase | SAMN05421757_105181 | Not Available | Positive | 3061256 - 3061825 | 20296.2 |
| bacteriophytochrome (light-regulated signal transduction histidine kinase) | SAMN05421757_105182 | Not Available | Positive | 3061818 - 3064379 | 92991.4 |
| putative dna modification/repair radical sam protein | SAMN05421757_105183 | Not Available | Positive | 3064490 - 3065737 | 46171.4 |
| dna polymerase | SAMN05421757_105184 | Not Available | Positive | 3065737 - 3067191 | 53872.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
