Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, lysr family | SAMN05421757_105165 | Not Available | Positive | 3040713 - 3041627 | 33519.7 |
| hypothetical protein | SAMN05421757_105166 | Not Available | Positive | 3041752 - 3042726 | 34540.9 |
| trap transporter, 4tm/12tm fusion protein | SAMN05421757_105167 | Not Available | Positive | 3042806 - 3045016 | 78050.7 |
| regulatory helix-turn-helix protein, lysr family | SAMN05421757_105168 | Not Available | Negative | 3045567 - 3045815 | 9085.94 |
| hypothetical protein | SAMN05421757_105169 | Not Available | Positive | 3046359 - 3046529 | 5739.19 |
| pyridine nucleotide-disulphide oxidoreductase | SAMN05421757_105170 | Not Available | Positive | 3047168 - 3047716 | 19840.1 |
| hypothetical protein | SAMN05421757_105171 | Not Available | Negative | 3047808 - 3048635 | 27706.7 |
| gamma-glutamyltranspeptidase / glutathione hydrolase | SAMN05421757_105172 | Not Available | Negative | 3048639 - 3050429 | 64367.4 |
| fumarylpyruvate hydrolase | SAMN05421757_105173 | Not Available | Negative | 3050513 - 3051217 | 25581.8 |
| nitt/taut family transport system substrate-binding protein | SAMN05421757_105174 | Not Available | Positive | 3051352 - 3052371 | 36506.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
