Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_105155 | Not Available | Positive | 3028526 - 3029830 | 45660.3 |
| hypothetical protein | SAMN05421757_105156 | Not Available | Positive | 3029833 - 3030624 | 28628.3 |
| transcriptional regulator, rpir family | SAMN05421757_105157 | Not Available | Negative | 3030769 - 3031674 | 33345.8 |
| tripartite atp-independent transporter solute receptor, dctp family | SAMN05421757_105158 | Not Available | Negative | 3031797 - 3032798 | 36539.4 |
| c4-dicarboxylate transporter, dctm subunit | SAMN05421757_105159 | Not Available | Negative | 3032828 - 3034120 | 45268.0 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421757_105160 | Not Available | Negative | 3034123 - 3034620 | 19016.4 |
| fructuronate reductase | SAMN05421757_105161 | Not Available | Negative | 3034613 - 3036052 | 51601.2 |
| (r,r)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase/l-idonate 5-dehydrogenase | SAMN05421757_105162 | Not Available | Negative | 3036049 - 3036999 | 33035.0 |
| 5-dehydro-2-deoxygluconokinase | SAMN05421757_105163 | Not Available | Positive | 3037256 - 3039154 | 69377.2 |
| tartrate dehydrogenase/decarboxylase / d-malate dehydrogenase | SAMN05421757_105164 | Not Available | Negative | 3039453 - 3040586 | 40401.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
