Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron(iii) transport system substrate-binding protein | SAMN05421757_105135 | Not Available | Positive | 3006252 - 3007283 | 36058.5 |
| iron(iii) transport system permease protein | SAMN05421757_105136 | Not Available | Positive | 3007351 - 3009495 | 76754.2 |
| iron(iii) transport system atp-binding protein | SAMN05421757_105137 | Not Available | Positive | 3009505 - 3010557 | 37996.8 |
| xaa-pro dipeptidase | SAMN05421757_105138 | Not Available | Negative | 3010693 - 3011835 | 41530.5 |
| acetylornithine deacetylase | SAMN05421757_105139 | Not Available | Negative | 3011832 - 3013058 | 43730.2 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_105140 | Not Available | Negative | 3013055 - 3015100 | 72856.3 |
| peptide/nickel transport system permease protein | SAMN05421757_105141 | Not Available | Negative | 3015097 - 3015930 | 28684.6 |
| peptide/nickel transport system permease protein | SAMN05421757_105142 | Not Available | Negative | 3015927 - 3016877 | 33469.7 |
| peptide/nickel transport system substrate-binding protein | SAMN05421757_105143 | Not Available | Negative | 3016956 - 3018509 | 56031.3 |
| succinyl-diaminopimelate desuccinylase | SAMN05421757_105144 | Not Available | Negative | 3018506 - 3019765 | 44609.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
