Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_105115 | Not Available | Positive | 2984318 - 2984905 | 21853.1 |
| hypothetical protein | SAMN05421757_105116 | Not Available | Negative | 2985202 - 2986593 | 51503.2 |
| radical sam superfamily enzyme, moaa/nifb/pqqe/skfb family | SAMN05421757_105117 | Not Available | Negative | 2986586 - 2987701 | 41636.9 |
| ubiquinol-cytochrome c reductase cytochrome c1 subunit | SAMN05421757_105118 | Not Available | Negative | 2988002 - 2988790 | 28437.8 |
| ubiquinol-cytochrome c reductase cytochrome b subunit | SAMN05421757_105119 | Not Available | Negative | 2988810 - 2990147 | 50292.9 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | SAMN05421757_105120 | Not Available | Negative | 2990163 - 2990741 | 20360.7 |
| lipid a oxidase | SAMN05421757_105121 | Not Available | Positive | 2991050 - 2991709 | 24046.6 |
| glutathione s-transferase | SAMN05421757_105122 | Not Available | Negative | 2991790 - 2992395 | 22423.0 |
| threonylcarbamoyladenosine trna methylthiotransferase mtab | SAMN05421757_105123 | Not Available | Negative | 2992463 - 2993728 | 46314.7 |
| diaminopimelate epimerase | SAMN05421757_105124 | Not Available | Negative | 2993728 - 2994633 | 32078.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
