Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine/homoserine efflux transporter rhta | SAMN05421757_105105 | Not Available | Positive | 2975691 - 2976578 | 30843.9 |
| cytochrome c biogenesis protein ccda | SAMN05421757_105106 | Not Available | Positive | 2976636 - 2977349 | 24620.9 |
| thioredoxin | SAMN05421757_105107 | Not Available | Positive | 2977365 - 2977784 | 14853.0 |
| glutathione s-transferase | SAMN05421757_105108 | Not Available | Negative | 2977781 - 2978398 | 22445.8 |
| hypothetical protein | SAMN05421757_105109 | Not Available | Negative | 2978589 - 2978780 | 7180.53 |
| hypothetical protein | SAMN05421757_105110 | Not Available | Positive | 2979224 - 2979712 | 17317.6 |
| chorismate synthase | SAMN05421757_105111 | Not Available | Negative | 2979798 - 2980907 | 39029.6 |
| mfs transporter, dha1 family, bicyclomycin/chloramphenicol resistance protein | SAMN05421757_105112 | Not Available | Negative | 2981022 - 2982242 | 41738.8 |
| transcriptional regulator, tetr family | SAMN05421757_105113 | Not Available | Positive | 2982380 - 2982958 | 21678.7 |
| hypothetical protein | SAMN05421757_105114 | Not Available | Positive | 2983119 - 2984291 | 41785.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
