Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| monosaccharide abc transporter substrate-binding protein, cut2 family | SAMN05421757_10575 | Not Available | Positive | 2943756 - 2944706 | 33248.6 |
| monosaccharide abc transporter membrane protein, cut2 family | SAMN05421757_10576 | Not Available | Positive | 2944795 - 2945919 | 39983.1 |
| monosaccharide abc transporter atp-binding protein, cut2 family | SAMN05421757_10577 | Not Available | Positive | 2945921 - 2946709 | 28157.3 |
| hypothetical protein | SAMN05421757_10578 | Not Available | Positive | 2946974 - 2947876 | 33430.9 |
| dna-binding beta-propeller fold protein ynce | SAMN05421757_10579 | Not Available | Positive | 2947924 - 2948802 | 30675.2 |
| dna-binding protein hu-beta | SAMN05421757_10580 | Not Available | Negative | 2948905 - 2949195 | 9987.21 |
| amp nucleosidase | SAMN05421757_10581 | Not Available | Negative | 2949327 - 2950811 | 55060.8 |
| adenine deaminase | SAMN05421757_10582 | Not Available | Negative | 2950808 - 2952613 | 63646.2 |
| uncharacterized protein, duf1810 family | SAMN05421757_10583 | Not Available | Positive | 2952725 - 2953168 | 16200.1 |
| nucleoside-diphosphate-sugar epimerase | SAMN05421757_10584 | Not Available | Positive | 2953427 - 2954290 | 30804.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
