Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421757_10565 | Not Available | Positive | 2932870 - 2933370 | 18755.5 |
| trap transporter, dctm subunit | SAMN05421757_10566 | Not Available | Positive | 2933367 - 2934677 | 45813.3 |
| fructose-bisphosphate aldolase, class ii | SAMN05421757_10567 | Not Available | Negative | 2934735 - 2935577 | 29415.9 |
| 5-deoxyglucuronate isomerase | SAMN05421757_10568 | Not Available | Negative | 2935574 - 2936416 | 31136.8 |
| 5-dehydro-2-deoxygluconokinase | SAMN05421757_10569 | Not Available | Negative | 2936431 - 2937414 | 34835.2 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase | SAMN05421757_10570 | Not Available | Negative | 2937414 - 2939279 | 67143.1 |
| predicted dehydrogenase | SAMN05421757_10571 | Not Available | Positive | 2939407 - 2940516 | 39943.5 |
| 2-keto-myo-inositol dehydratase | SAMN05421757_10572 | Not Available | Positive | 2940530 - 2941423 | 32800.6 |
| predicted dehydrogenase | SAMN05421757_10573 | Not Available | Positive | 2941435 - 2942568 | 40630.1 |
| transcriptional regulator, laci family | SAMN05421757_10574 | Not Available | Negative | 2942573 - 2943571 | 35695.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
