Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, laci family | SAMN05421757_10525 | Not Available | Negative | 2890464 - 2891492 | 37128.4 |
| monosaccharide abc transporter substrate-binding protein, cut2 family | SAMN05421757_10526 | Not Available | Positive | 2891889 - 2892848 | 32994.1 |
| monosaccharide abc transporter membrane protein, cut2 family | SAMN05421757_10527 | Not Available | Positive | 2892946 - 2894001 | 36975.7 |
| monosaccharide abc transporter atp-binding protein, cut2 family | SAMN05421757_10528 | Not Available | Positive | 2894012 - 2894836 | 29728.9 |
| myo-inositol 2-dehydrogenase / d-chiro-inositol 1-dehydrogenase | SAMN05421757_10529 | Not Available | Positive | 2894930 - 2895952 | 37115.2 |
| sugar phosphate isomerase/epimerase | SAMN05421757_10530 | Not Available | Positive | 2895949 - 2896908 | 34626.3 |
| hydroxypyruvate isomerase | SAMN05421757_10531 | Not Available | Positive | 2896910 - 2897683 | 28163.7 |
| myo-inositol 2-dehydrogenase | SAMN05421757_10532 | Not Available | Positive | 2897706 - 2898701 | 34689.5 |
| 5-dehydro-2-deoxygluconokinase | SAMN05421757_10533 | Not Available | Positive | 2898786 - 2900693 | 69566.6 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase | SAMN05421757_10534 | Not Available | Positive | 2900690 - 2902519 | 65034.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
