Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asparaginase | SAMN05421757_104500 | Not Available | Positive | 2858799 - 2859794 | 34867.6 |
| hypothetical protein | SAMN05421757_104501 | Not Available | Negative | 2859828 - 2860061 | 8167.44 |
| uncharacterized conserved protein | SAMN05421757_104502 | Not Available | Negative | 2860170 - 2860484 | 11015.9 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN05421757_104503 | Not Available | Negative | 2860524 - 2860961 | 16337.0 |
| transcriptional regulator, arsr family | SAMN05421757_104504 | Not Available | Negative | 2860961 - 2861284 | 11840.2 |
| phosphoserine phosphatase | SAMN05421757_104505 | Not Available | Negative | 2861356 - 2862234 | 30915.3 |
| protein of unknown function | SAMN05421757_1051 | Not Available | Negative | 2864285 - 2864962 | 25722.9 |
| hypothetical protein | SAMN05421757_1052 | Not Available | Negative | 2866152 - 2866901 | 28645.9 |
| hypothetical protein | SAMN05421757_1053 | Not Available | Positive | 2867138 - 2867887 | 27825.3 |
| hypothetical protein | SAMN05421757_1054 | Not Available | Positive | 2868003 - 2868665 | 25797.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
