Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molybdenum cofactor synthesis domain-containing protein | SAMN05421757_104470 | Not Available | Negative | 2829778 - 2830509 | 25415.5 |
| sugar fermentation stimulation protein a | SAMN05421757_104471 | Not Available | Positive | 2830559 - 2831287 | 26859.2 |
| methionine aminopeptidase, type i | SAMN05421757_104472 | Not Available | Positive | 2831362 - 2832171 | 29392.0 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05421757_104473 | Not Available | Positive | 2832319 - 2833380 | 37720.0 |
| 16s rrna (guanine966-n2)-methyltransferase | SAMN05421757_104474 | Not Available | Negative | 2833529 - 2834116 | 20849.7 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit | SAMN05421757_104475 | Not Available | Negative | 2834113 - 2835324 | 43286.8 |
| 4a-hydroxytetrahydrobiopterin dehydratase | SAMN05421757_104476 | Not Available | Negative | 2835428 - 2835712 | 10670.5 |
| hypothetical protein | SAMN05421757_104477 | Not Available | Negative | 2835709 - 2836899 | 44016.6 |
| glycerophosphoryl diester phosphodiesterase | SAMN05421757_104478 | Not Available | Negative | 2836953 - 2837708 | 26851.8 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN05421757_104479 | Not Available | Negative | 2837739 - 2838203 | 15490.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
