Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein imub | SAMN05421757_104440 | Not Available | Negative | 2795416 - 2797092 | 60453.1 |
| rnase r | SAMN05421757_104441 | Not Available | Positive | 2797326 - 2799632 | 85116.6 |
| lytic murein transglycosylase | SAMN05421757_104442 | Not Available | Positive | 2799744 - 2801012 | 45544.7 |
| acetolactate synthase-1/2/3 large subunit | SAMN05421757_104443 | Not Available | Positive | 2801635 - 2803314 | 59795.6 |
| peptidase inhibitor i78 family protein | SAMN05421757_104444 | Not Available | Negative | 2803328 - 2803792 | 15952.0 |
| s-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase | SAMN05421757_104445 | Not Available | Positive | 2803866 - 2804978 | 39163.2 |
| ost-hth/lotus domain-containing protein | SAMN05421757_104446 | Not Available | Positive | 2805084 - 2805806 | 26712.5 |
| hypothetical protein | SAMN05421757_104447 | Not Available | Positive | 2805936 - 2807120 | 43456.0 |
| hypothetical protein | SAMN05421757_104448 | Not Available | Positive | 2807448 - 2808629 | 42976.0 |
| transcriptional regulator, tetr family | SAMN05421757_104449 | Not Available | Negative | 2808678 - 2809295 | 23177.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
