Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_104410 | Not Available | Positive | 2767662 - 2768177 | 18031.6 |
| cation diffusion facilitator family transporter | SAMN05421757_104411 | Not Available | Negative | 2768180 - 2769076 | 32058.2 |
| l-2-hydroxyglutarate oxidase lhgo | SAMN05421757_104412 | Not Available | Positive | 2769208 - 2770344 | 40181.3 |
| transcriptional regulator, tetr family | SAMN05421757_104413 | Not Available | Positive | 2770535 - 2771182 | 24170.7 |
| acrylyl-coa reductase (nadph) | SAMN05421757_104414 | Not Available | Positive | 2771193 - 2772185 | 34063.2 |
| dimethylsulfoniopropionate lyase dddl | SAMN05421757_104415 | Not Available | Positive | 2772216 - 2772923 | 26049.2 |
| hypothetical protein | SAMN05421757_104416 | Not Available | Negative | 2772936 - 2773847 | 32798.1 |
| zinc transporter, zip family | SAMN05421757_104417 | Not Available | Positive | 2773958 - 2774740 | 26808.2 |
| peroxiredoxin | SAMN05421757_104418 | Not Available | Positive | 2774914 - 2775447 | 19590.5 |
| protein of unknown function | SAMN05421757_104419 | Not Available | Negative | 2775460 - 2775786 | 12089.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
