Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c556 | SAMN05421757_104360 | Not Available | Negative | 2730894 - 2731349 | 15671.7 |
| recombination protein mgsa | SAMN05421757_104361 | Not Available | Negative | 2731481 - 2732791 | 47565.8 |
| luxr family transcriptional regulator | SAMN05421757_104362 | Not Available | Negative | 2732902 - 2733513 | 22000.3 |
| lsu ribosomal protein l17p | SAMN05421757_104363 | Not Available | Negative | 2733679 - 2734092 | 15517.9 |
| dna-directed rna polymerase subunit alpha | SAMN05421757_104364 | Not Available | Negative | 2734209 - 2735225 | 37122.3 |
| ssu ribosomal protein s11p | SAMN05421757_104365 | Not Available | Negative | 2735344 - 2735733 | 13816.5 |
| ssu ribosomal protein s13p | SAMN05421757_104366 | Not Available | Negative | 2735749 - 2736117 | 13529.5 |
| dna repair protein radc | SAMN05421757_104367 | Not Available | Negative | 2736421 - 2737368 | 35053.0 |
| protein translocase subunit secy/sec61 alpha | SAMN05421757_104368 | Not Available | Negative | 2737535 - 2738857 | 47756.5 |
| lsu ribosomal protein l15p | SAMN05421757_104369 | Not Available | Negative | 2738991 - 2739476 | 16886.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
