Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome-associated protein | SAMN05421757_101218 | Not Available | Positive | 244457 - 244843 | 14155.9 |
| 23s rrna (pseudouridine1915-n3)-methyltransferase | SAMN05421757_101219 | Not Available | Positive | 244798 - 245313 | 18485.4 |
| uncharacterized sam-binding protein ycdf, duf218 family | SAMN05421757_101220 | Not Available | Positive | 245420 - 246190 | 28093.1 |
| phosphoglycerate mutase | SAMN05421757_101221 | Not Available | Positive | 246295 - 247824 | 54259.2 |
| septal ring factor envc, activator of murein hydrolases amia and amib | SAMN05421757_101222 | Not Available | Positive | 247821 - 248960 | 39665.7 |
| carboxyl-terminal processing protease | SAMN05421757_101223 | Not Available | Positive | 248968 - 250311 | 48480.7 |
| putative (di)nucleoside polyphosphate hydrolase | SAMN05421757_101224 | Not Available | Positive | 250413 - 250892 | 18177.5 |
| dna polymerase iii, alpha subunit | SAMN05421757_101225 | Not Available | Positive | 250959 - 253970 | 110237.0 |
| hypothetical protein | SAMN05421757_101226 | Not Available | Positive | 254137 - 254331 | 7098.5 |
| nadph:quinone reductase | SAMN05421757_101227 | Not Available | Negative | 254375 - 255433 | 37004.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
