Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphohistidine phosphatase | SAMN05421757_104350 | Not Available | Positive | 2721964 - 2722464 | 18535.4 |
| l-glutamine abc transporter atp-binding protein /l-glutamate abc transporter atp-binding protein /l-aspartate abc transporter atp-binding protein /l-asparagine abc transporter atp-binding protein | SAMN05421757_104351 | Not Available | Negative | 2722528 - 2723319 | 30035.4 |
| l-glutamine abc transporter membrane protein /l-glutamate abc transporter membrane protein /l-aspartate abc transporter membrane protein /l-asparagine abc transporter membrane protein | SAMN05421757_104352 | Not Available | Negative | 2723330 - 2724622 | 47710.7 |
| l-glutamine abc transporter membrane protein /l-glutamate abc transporter membrane protein /l-aspartate abc transporter membrane protein /l-asparagine abc transporter membrane protein | SAMN05421757_104353 | Not Available | Negative | 2724624 - 2725943 | 48113.7 |
| l-glutamine-binding protein /l-glutamate-binding protein /l-aspartate-binding protein /l-asparagine-binding protein | SAMN05421757_104354 | Not Available | Negative | 2726079 - 2727095 | 35655.9 |
| chaperone required for the assembly of the f1-atpase | SAMN05421757_104355 | Not Available | Negative | 2727336 - 2728052 | 25940.6 |
| phosphoglycolate phosphatase | SAMN05421757_104356 | Not Available | Negative | 2728053 - 2728739 | 24208.9 |
| ribosomal large subunit pseudouridine synthase c | SAMN05421757_104357 | Not Available | Negative | 2728736 - 2729785 | 38029.6 |
| camphor resistance protein crcb | SAMN05421757_104358 | Not Available | Negative | 2729782 - 2730165 | 13078.6 |
| cytochrome b | SAMN05421757_104359 | Not Available | Negative | 2730217 - 2730888 | 24548.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
