Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa thioesterase-1 | SAMN05421757_104340 | Not Available | Positive | 2711394 - 2712053 | 22674.9 |
| fad/fmn-containing dehydrogenase | SAMN05421757_104341 | Not Available | Positive | 2712076 - 2713485 | 48972.1 |
| trna 2-thiocytidine biosynthesis protein ttca | SAMN05421757_104342 | Not Available | Positive | 2713531 - 2714376 | 32168.8 |
| diguanylate cyclase/phosphodiesterase | SAMN05421757_104343 | Not Available | Positive | 2714470 - 2716008 | 56429.9 |
| protein translocase subunit yidc | SAMN05421757_104344 | Not Available | Positive | 2716159 - 2717976 | 67410.2 |
| hypothetical protein | SAMN05421757_104345 | Not Available | Positive | 2717973 - 2718734 | 27368.5 |
| gtp-binding protein | SAMN05421757_104346 | Not Available | Positive | 2718731 - 2719384 | 23455.6 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421757_104347 | Not Available | Negative | 2719494 - 2720234 | 26128.1 |
| n-acetylglutamate kinase | SAMN05421757_104348 | Not Available | Positive | 2720352 - 2721239 | 31065.0 |
| hypothetical protein | SAMN05421757_104349 | Not Available | Positive | 2721284 - 2721967 | 23939.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
