Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_104330 | Not Available | Positive | 2699671 - 2699970 | 10723.9 |
| anti-ecfsigma factor, chrr | SAMN05421757_104331 | Not Available | Positive | 2700014 - 2700691 | 24450.8 |
| hypothetical protein | SAMN05421757_104332 | Not Available | Positive | 2700727 - 2701689 | 35568.0 |
| 6-phosphogluconate dehydrogenase (decarboxylating) | SAMN05421757_104333 | Not Available | Positive | 2701771 - 2703180 | 49728.3 |
| Trna-met | Not Available | Not Available | Positive | 2703398 - 2703474 | Not Available |
| selenophosphate synthase | SAMN05421757_104335 | Not Available | Positive | 2703625 - 2705802 | 75648.9 |
| trna 2-selenouridine synthase | SAMN05421757_104336 | Not Available | Negative | 2705786 - 2706853 | 38757.3 |
| isopenicillin n synthase | SAMN05421757_104337 | Not Available | Positive | 2707203 - 2708099 | 32703.6 |
| putative abc transport system permease protein | SAMN05421757_104338 | Not Available | Negative | 2708118 - 2710652 | 88373.1 |
| putative abc transport system atp-binding protein | SAMN05421757_104339 | Not Available | Negative | 2710649 - 2711350 | 24454.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
