Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had-superfamily class iia hydrolase, tigr01459 | SAMN05421757_104300 | Not Available | Positive | 2666860 - 2667768 | 32588.8 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05421757_104301 | Not Available | Positive | 2667880 - 2669190 | 47312.0 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN05421757_104302 | Not Available | Positive | 2669237 - 2670118 | 32628.3 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN05421757_104303 | Not Available | Positive | 2670118 - 2670972 | 31775.9 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN05421757_104304 | Not Available | Positive | 2670973 - 2671977 | 36082.6 |
| hypothetical protein | SAMN05421757_104305 | Not Available | Negative | 2672044 - 2672301 | 10126.5 |
| phosphate:na+ symporter | SAMN05421757_104306 | Not Available | Negative | 2672351 - 2674144 | 64655.6 |
| hydroxypyruvate isomerase | SAMN05421757_104307 | Not Available | Negative | 2674346 - 2675110 | 27294.3 |
| acyl-coa synthetase (amp-forming)/amp-acid ligase ii | SAMN05421757_104308 | Not Available | Negative | 2675135 - 2676556 | 50460.1 |
| hypothetical protein | SAMN05421757_104309 | Not Available | Negative | 2676540 - 2677388 | 30405.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
