Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucosamine kinase | SAMN05421757_104290 | Not Available | Positive | 2656547 - 2657425 | 30073.8 |
| transcriptional regulator, gntr family | SAMN05421757_104291 | Not Available | Positive | 2657422 - 2658183 | 27912.5 |
| glutamine--fructose-6-phosphate transaminase | SAMN05421757_104292 | Not Available | Positive | 2658196 - 2659227 | 37061.3 |
| n-acetylglucosamine 6-phosphate deacetylase | SAMN05421757_104293 | Not Available | Positive | 2659224 - 2660378 | 39234.2 |
| ferrous iron transport protein a | SAMN05421757_104294 | Not Available | Positive | 2660554 - 2660889 | 12511.5 |
| ferrous iron transport protein b | SAMN05421757_104295 | Not Available | Positive | 2660882 - 2663392 | 90789.8 |
| hypothetical protein | SAMN05421757_104296 | Not Available | Positive | 2663389 - 2663664 | 9255.24 |
| uncharacterized conserved protein, duf849 family | SAMN05421757_104297 | Not Available | Negative | 2663661 - 2664494 | 30121.0 |
| agmatinase | SAMN05421757_104298 | Not Available | Positive | 2664793 - 2665761 | 34682.0 |
| transcriptional regulator, deor family | SAMN05421757_104299 | Not Available | Positive | 2665992 - 2666801 | 28383.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
