Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_104280 | Not Available | Positive | 2646027 - 2647091 | 37579.3 |
| methyltransferase domain-containing protein | SAMN05421757_104281 | Not Available | Positive | 2647237 - 2647968 | 27120.5 |
| phosphomannomutase | SAMN05421757_104282 | Not Available | Negative | 2647965 - 2649335 | 48646.9 |
| uncharacterized membrane protein | SAMN05421757_104283 | Not Available | Positive | 2649481 - 2650137 | 23591.6 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN05421757_104284 | Not Available | Negative | 2650144 - 2651139 | 35796.1 |
| predicted dehydrogenase | SAMN05421757_104285 | Not Available | Negative | 2651136 - 2652170 | 37365.2 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN05421757_104286 | Not Available | Negative | 2652167 - 2653006 | 30911.0 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN05421757_104287 | Not Available | Negative | 2653017 - 2653934 | 34372.9 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05421757_104288 | Not Available | Negative | 2654190 - 2655446 | 45297.5 |
| n-acetylmuramic acid 6-phosphate etherase | SAMN05421757_104289 | Not Available | Negative | 2655491 - 2656384 | 29817.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
