Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| small conductance mechanosensitive channel | SAMN05421757_104270 | Not Available | Positive | 2634700 - 2636193 | 52723.7 |
| oligopeptide transport system atp-binding protein | SAMN05421757_104271 | Not Available | Negative | 2636297 - 2637307 | 36654.9 |
| oligopeptide transport system atp-binding protein | SAMN05421757_104272 | Not Available | Negative | 2637304 - 2638272 | 35709.5 |
| oligopeptide transport system permease protein | SAMN05421757_104273 | Not Available | Negative | 2638276 - 2639220 | 34196.4 |
| oligopeptide transport system permease protein | SAMN05421757_104274 | Not Available | Negative | 2639229 - 2640152 | 33937.5 |
| oligopeptide transport system substrate-binding protein | SAMN05421757_104275 | Not Available | Negative | 2640216 - 2641832 | 60335.6 |
| imelysin. metallo peptidase. merops family m75 | SAMN05421757_104276 | Not Available | Positive | 2642361 - 2643614 | 44052.1 |
| bfd-like | SAMN05421757_104277 | Not Available | Positive | 2643677 - 2643931 | 9320.48 |
| bacterioferritin | SAMN05421757_104278 | Not Available | Positive | 2643918 - 2644403 | 18578.8 |
| cxxc motif-containing protein, duf1111 family | SAMN05421757_104279 | Not Available | Positive | 2644468 - 2646012 | 55190.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
