Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose reductase | SAMN05421757_101208 | Not Available | Positive | 234751 - 235671 | 33411.2 |
| endonuclease/exonuclease/phosphatase family protein | SAMN05421757_101209 | Not Available | Negative | 235591 - 236664 | 37322.1 |
| hypothetical protein | SAMN05421757_101210 | Not Available | Negative | 236685 - 237524 | 30233.8 |
| 3-isopropylmalate dehydratase, small subunit | SAMN05421757_101211 | Not Available | Negative | 237784 - 238389 | 22065.2 |
| protein of unknown function | SAMN05421757_101212 | Not Available | Negative | 238460 - 239278 | 29591.9 |
| hupe / urej protein | SAMN05421757_101213 | Not Available | Positive | 239301 - 240422 | 39372.1 |
| uncharacterized membrane protein hded, duf308 family | SAMN05421757_101214 | Not Available | Negative | 240442 - 240966 | 18784.1 |
| 3-isopropylmalate/(r)-2-methylmalate dehydratase large subunit | SAMN05421757_101215 | Not Available | Negative | 241018 - 242424 | 50398.2 |
| mechanosensitive ion channel | SAMN05421757_101216 | Not Available | Positive | 242666 - 243997 | 48877.6 |
| hypothetical protein | SAMN05421757_101217 | Not Available | Positive | 244110 - 244256 | 5347.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
