Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase catalytic domain | SAMN05421757_104220 | Not Available | Positive | 2587806 - 2588348 | 20192.0 |
| hypothetical protein | SAMN05421757_104221 | Not Available | Negative | 2588403 - 2588756 | 12958.4 |
| response regulator receiver domain-containing protein | SAMN05421757_104222 | Not Available | Negative | 2588900 - 2589265 | 13611.3 |
| l-threonine o-3-phosphate decarboxylase | SAMN05421757_104223 | Not Available | Positive | 2589455 - 2590432 | 34763.2 |
| adenosylcobinamide-phosphate synthase | SAMN05421757_104224 | Not Available | Positive | 2590429 - 2591346 | 32623.0 |
| creatinase | SAMN05421757_104225 | Not Available | Positive | 2591495 - 2592706 | 44367.2 |
| predicted arabinose efflux permease, mfs family | SAMN05421757_104226 | Not Available | Negative | 2592723 - 2593859 | 39002.7 |
| transcriptional regulator, deor family | SAMN05421757_104227 | Not Available | Negative | 2593852 - 2594619 | 25599.1 |
| hypothetical protein | SAMN05421757_104228 | Not Available | Negative | 2594760 - 2595803 | 39639.5 |
| peptide/nickel transport system substrate-binding protein | SAMN05421757_104229 | Not Available | Negative | 2595987 - 2597459 | 52683.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
