Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein, laba/duf88 family | SAMN05421757_104210 | Not Available | Positive | 2580735 - 2581313 | 22207.5 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | SAMN05421757_104211 | Not Available | Positive | 2581463 - 2582416 | 34426.3 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN05421757_104212 | Not Available | Positive | 2582413 - 2583027 | 21494.0 |
| protein of unknown function | SAMN05421757_104213 | Not Available | Positive | 2583024 - 2583476 | 16225.4 |
| ribonuclease hi | SAMN05421757_104214 | Not Available | Positive | 2583546 - 2583998 | 16409.4 |
| methionyl-trna formyltransferase | SAMN05421757_104215 | Not Available | Negative | 2584105 - 2585004 | 31908.7 |
| peptide deformylase | SAMN05421757_104216 | Not Available | Negative | 2585009 - 2585506 | 18596.5 |
| peptide deformylase | SAMN05421757_104217 | Not Available | Negative | 2585503 - 2585997 | 18064.7 |
| peptide deformylase | SAMN05421757_104218 | Not Available | Negative | 2586002 - 2586523 | 19859.1 |
| cystathione beta-lyase | SAMN05421757_104219 | Not Available | Positive | 2586637 - 2587806 | 43342.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
