Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp:cob(i)alamin adenosyltransferase | SAMN05421757_104200 | Not Available | Negative | 2571090 - 2571662 | 20779.8 |
| hypoxia induced protein conserved region | SAMN05421757_104201 | Not Available | Negative | 2571664 - 2571867 | 7482.6 |
| short-chain dehydrogenase | SAMN05421757_104202 | Not Available | Negative | 2571928 - 2572758 | 30703.0 |
| sh3 domain-containing protein | SAMN05421757_104203 | Not Available | Negative | 2572819 - 2573394 | 19683.1 |
| sh3 domain-containing protein | SAMN05421757_104204 | Not Available | Negative | 2573516 - 2574154 | 21487.9 |
| dna topoisomerase iv subunit a | SAMN05421757_104205 | Not Available | Positive | 2574256 - 2576652 | 89225.1 |
| hypothetical protein | SAMN05421757_104206 | Not Available | Negative | 2576722 - 2577435 | 26704.9 |
| gtp pyrophosphokinase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | SAMN05421757_104207 | Not Available | Negative | 2577470 - 2579587 | 79794.2 |
| dna-directed rna polymerase subunit omega | SAMN05421757_104208 | Not Available | Negative | 2579623 - 2579979 | 13306.6 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridinediphosphokinase | SAMN05421757_104209 | Not Available | Negative | 2580018 - 2580602 | 20879.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
