Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein n-acetyltransferase, rimj/riml family | SAMN05421757_104160 | Not Available | Negative | 2533299 - 2534030 | 27124.1 |
| coproporphyrinogen oxidase | SAMN05421757_104161 | Not Available | Negative | 2534021 - 2534911 | 32703.2 |
| hypothetical protein | SAMN05421757_104162 | Not Available | Positive | 2535017 - 2535421 | 14853.0 |
| 7-alpha-hydroxysteroid dehydrogenase | SAMN05421757_104163 | Not Available | Negative | 2535444 - 2536265 | 29096.8 |
| 16s rrna m(2)g 1207 methyltransferase | SAMN05421757_104164 | Not Available | Negative | 2536318 - 2537322 | 35878.6 |
| carbon-monoxide dehydrogenase small subunit | SAMN05421757_104165 | Not Available | Positive | 2537861 - 2538331 | 16585.0 |
| carbon-monoxide dehydrogenase large subunit | SAMN05421757_104166 | Not Available | Positive | 2538390 - 2540750 | 83542.7 |
| carbon-monoxide dehydrogenase medium subunit | SAMN05421757_104167 | Not Available | Positive | 2540764 - 2541561 | 26899.9 |
| cyclopropane-fatty-acyl-phospholipid synthase | SAMN05421757_104168 | Not Available | Positive | 2541741 - 2542937 | 45532.5 |
| translation elongation factor 1a (ef-1a/ef-tu) | SAMN05421757_104169 | Not Available | Negative | 2542999 - 2544174 | 42783.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
