Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, gntr family | SAMN05421757_101198 | Not Available | Positive | 223308 - 223976 | 24641.1 |
| predicted arabinose efflux permease, mfs family | SAMN05421757_101199 | Not Available | Positive | 224185 - 225786 | 57339.7 |
| atp-binding cassette, subfamily b, msba | SAMN05421757_101200 | Not Available | Negative | 225842 - 227623 | 64238.3 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421757_101201 | Not Available | Positive | 227953 - 229110 | 42176.6 |
| glycosyltransferase, gt2 family | SAMN05421757_101202 | Not Available | Positive | 229116 - 230024 | 33710.0 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN05421757_101203 | Not Available | Positive | 230021 - 231130 | 40627.7 |
| Trna-pro | Not Available | Not Available | Positive | 231284 - 231360 | Not Available |
| permease of the drug/metabolite transporter (dmt) superfamily | SAMN05421757_101205 | Not Available | Negative | 231413 - 232393 | 35123.8 |
| 3-isopropylmalate dehydrogenase | SAMN05421757_101206 | Not Available | Negative | 232524 - 233633 | 39610.4 |
| transcriptional regulator, lysr family | SAMN05421757_101207 | Not Available | Negative | 233739 - 234644 | 33227.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
