Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toprim domain-containing protein | SAMN05421757_104140 | Not Available | Positive | 2508367 - 2509254 | 31602.8 |
| protein of unknown function | SAMN05421757_104141 | Not Available | Positive | 2509251 - 2510747 | 54075.8 |
| predicted homoserine dehydrogenase, contains c-terminal saf domain | SAMN05421757_104142 | Not Available | Positive | 2511624 - 2512958 | 47428.0 |
| arylsulfatase | SAMN05421757_104143 | Not Available | Negative | 2513900 - 2516401 | 91939.4 |
| hypothetical protein | SAMN05421757_104144 | Not Available | Negative | 2516507 - 2516746 | 8192.82 |
| arac-type dna-binding protein | SAMN05421757_104145 | Not Available | Positive | 2516963 - 2517976 | 36714.4 |
| protein of unknown function | SAMN05421757_104146 | Not Available | Negative | 2518216 - 2518668 | 16297.9 |
| uncharacterized conserved protein | SAMN05421757_104147 | Not Available | Positive | 2520116 - 2521582 | 53873.1 |
| transposase, is4 family | SAMN05421757_104148 | Not Available | Negative | 2521847 - 2522779 | 35177.4 |
| s-adenosylmethionine uptake transporter | SAMN05421757_104149 | Not Available | Negative | 2523233 - 2524159 | 33444.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
