Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_104130 | Not Available | Positive | 2499589 - 2500326 | 27677.3 |
| alkylhydroperoxidase family enzyme, contains cxxc motif | SAMN05421757_104131 | Not Available | Positive | 2500425 - 2501081 | 24437.6 |
| yhs domain-containing protein | SAMN05421757_104132 | Not Available | Positive | 2501496 - 2501951 | 16308.5 |
| hemerythrin hhe cation binding domain-containing protein | SAMN05421757_104133 | Not Available | Negative | 2502082 - 2502660 | 21811.3 |
| catechol 2,3-dioxygenase | SAMN05421757_104134 | Not Available | Negative | 2502699 - 2503301 | 22695.7 |
| phenylacetate-coa ligase | SAMN05421757_104135 | Not Available | Negative | 2503326 - 2504639 | 46748.8 |
| citrate synthase | SAMN05421757_104136 | Not Available | Negative | 2504636 - 2505418 | 27986.8 |
| integrase | SAMN05421757_104137 | Not Available | Positive | 2505926 - 2507143 | 45183.8 |
| transcriptional regulator, alpa family | SAMN05421757_104138 | Not Available | Positive | 2507454 - 2507639 | 7071.8 |
| hypothetical protein | SAMN05421757_104139 | Not Available | Positive | 2507996 - 2508370 | 13627.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
