Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05421757_104120 | Not Available | Positive | 2490241 - 2491212 | 34747.6 |
| malate/lactate/ureidoglycolate dehydrogenase, ldh2 family | SAMN05421757_104121 | Not Available | Negative | 2491300 - 2492352 | 37205.4 |
| cupin domain protein | SAMN05421757_104122 | Not Available | Positive | 2492385 - 2492822 | 15347.1 |
| dna-binding transcriptional regulator, fadr family | SAMN05421757_104123 | Not Available | Positive | 2492980 - 2493666 | 24663.5 |
| myo-inositol 2-dehydrogenase / d-chiro-inositol 1-dehydrogenase | SAMN05421757_104124 | Not Available | Positive | 2493774 - 2494859 | 39942.1 |
| 3-hydroxyisobutyrate dehydrogenase | SAMN05421757_104125 | Not Available | Positive | 2494856 - 2495716 | 29469.4 |
| 3-hydroxyisobutyrate dehydrogenase | SAMN05421757_104126 | Not Available | Positive | 2495709 - 2496572 | 29899.1 |
| hypothetical protein | SAMN05421757_104127 | Not Available | Negative | 2496582 - 2497049 | 17499.7 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN05421757_104128 | Not Available | Negative | 2497061 - 2497987 | 32587.7 |
| l-iditol 2-dehydrogenase | SAMN05421757_104129 | Not Available | Negative | 2498005 - 2499174 | 40815.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
