Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autotransporter secretion outer membrane protein tama | SAMN05421757_104100 | Not Available | Negative | 2469265 - 2471142 | 67322.8 |
| chromosome partitioning protein | SAMN05421757_104101 | Not Available | Positive | 2471402 - 2472040 | 22317.7 |
| glycosyltransferase | SAMN05421757_104102 | Not Available | Positive | 2472209 - 2472949 | 27345.3 |
| gdpmannose 4,6-dehydratase | SAMN05421757_104103 | Not Available | Positive | 2472965 - 2474086 | 42225.3 |
| gdpmannose 4,6-dehydratase/gdp-l-fucose synthase | SAMN05421757_104104 | Not Available | Positive | 2474097 - 2475059 | 35136.1 |
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN05421757_104105 | Not Available | Negative | 2475105 - 2475794 | 25916.6 |
| polysaccharide export outer membrane protein | SAMN05421757_104106 | Not Available | Negative | 2476052 - 2477233 | 41631.6 |
| hypothetical protein | SAMN05421757_104107 | Not Available | Positive | 2477459 - 2478097 | 22973.2 |
| Trna-ser | Not Available | Not Available | Positive | 2478216 - 2478305 | Not Available |
| flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ssud and methylene tetrahydromethanopterin reductase) | SAMN05421757_104109 | Not Available | Positive | 2478733 - 2479842 | 40860.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
