Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterised nucleotidyltransferase | SAMN05421757_10480 | Not Available | Positive | 2444518 - 2445591 | 38913.9 |
| hypothetical protein | SAMN05421757_10481 | Not Available | Positive | 2445594 - 2446757 | 41680.4 |
| capsular exopolysaccharide family | SAMN05421757_10482 | Not Available | Positive | 2446911 - 2449190 | 84417.1 |
| serine/threonine protein phosphatase 1 | SAMN05421757_10483 | Not Available | Positive | 2449220 - 2449987 | 28708.3 |
| vanz like family protein | SAMN05421757_10484 | Not Available | Positive | 2449980 - 2450402 | 14840.5 |
| vplpa-cterm protein sorting domain-containing protein | SAMN05421757_10485 | Not Available | Negative | 2450472 - 2451179 | 25107.0 |
| o-antigen ligase | SAMN05421757_10486 | Not Available | Negative | 2451524 - 2452897 | 48216.4 |
| hypothetical protein | SAMN05421757_10487 | Not Available | Positive | 2453140 - 2453487 | 12207.0 |
| arsenite transporter, acr3 family | SAMN05421757_10488 | Not Available | Negative | 2453812 - 2454858 | 36961.6 |
| hypothetical protein | SAMN05421757_10489 | Not Available | Negative | 2454877 - 2456145 | 44884.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
