Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinate-nucleotide adenylyltransferase | SAMN05421757_10470 | Not Available | Negative | 2436691 - 2437287 | 22326.1 |
| trypsin | SAMN05421757_10471 | Not Available | Positive | 2437409 - 2438326 | 32769.1 |
| atp-binding cassette protein, chvd family | SAMN05421757_10472 | Not Available | Positive | 2438411 - 2440066 | 61361.0 |
| hypothetical protein | SAMN05421757_10473 | Not Available | Negative | 2440818 - 2440925 | 4265.89 |
| divalent cation tolerance protein | SAMN05421757_10474 | Not Available | Positive | 2441070 - 2441396 | 12106.5 |
| hypothetical protein | SAMN05421757_10475 | Not Available | Positive | 2441501 - 2441638 | 5052.11 |
| cold-shock dna-binding protein family | SAMN05421757_10476 | Not Available | Positive | 2441850 - 2442056 | 7228.53 |
| lipoprotein-anchoring transpeptidase erfk/srfk | SAMN05421757_10477 | Not Available | Positive | 2442339 - 2442902 | 20900.3 |
| lipid kinase yegs | SAMN05421757_10478 | Not Available | Negative | 2442912 - 2443826 | 32674.4 |
| hypothetical protein | SAMN05421757_10479 | Not Available | Positive | 2444262 - 2444501 | 8204.52 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
