Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative tricarboxylic transport membrane protein | SAMN05421757_10450 | Not Available | Positive | 2416019 - 2417518 | 51656.2 |
| sugar lactone lactonase yvre | SAMN05421757_10451 | Not Available | Positive | 2417525 - 2418412 | 32108.4 |
| transcriptional regulator, lysr family | SAMN05421757_10452 | Not Available | Negative | 2418426 - 2419448 | 38133.5 |
| choline dehydrogenase | SAMN05421757_10453 | Not Available | Positive | 2419525 - 2421183 | 60049.6 |
| l-alanine-dl-glutamate epimerase | SAMN05421757_10454 | Not Available | Positive | 2421173 - 2422381 | 44053.8 |
| aldehyde dehydrogenase (nad+) | SAMN05421757_10455 | Not Available | Positive | 2422399 - 2423829 | 51161.7 |
| histidine phosphatase superfamily (branch 1) | SAMN05421757_10456 | Not Available | Negative | 2423840 - 2424334 | 17401.8 |
| gamma-butyrobetaine dioxygenase | SAMN05421757_10457 | Not Available | Negative | 2424430 - 2425581 | 42616.5 |
| ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase | SAMN05421757_10458 | Not Available | Negative | 2425607 - 2426386 | 28609.6 |
| 3-hydroxyisobutyrate dehydrogenase | SAMN05421757_10459 | Not Available | Negative | 2426383 - 2427351 | 34041.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
