Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| general l-amino acid transport system substrate-binding protein | SAMN05421757_10440 | Not Available | Positive | 2405893 - 2406906 | 36589.3 |
| amino acid abc transporter membrane protein 1, paat family | SAMN05421757_10441 | Not Available | Positive | 2406981 - 2408150 | 42110.5 |
| general l-amino acid transport system permease protein | SAMN05421757_10442 | Not Available | Positive | 2408160 - 2409230 | 39833.3 |
| general l-amino acid transport system atp-binding protein | SAMN05421757_10443 | Not Available | Positive | 2409241 - 2409987 | 27722.6 |
| branched-chain amino acid aminotransferase | SAMN05421757_10444 | Not Available | Positive | 2409990 - 2410919 | 34306.1 |
| pyrroline-5-carboxylate reductase | SAMN05421757_10445 | Not Available | Positive | 2410922 - 2411734 | 27444.2 |
| dna-binding transcriptional regulator, lysr family | SAMN05421757_10446 | Not Available | Negative | 2411760 - 2412683 | 34206.3 |
| arylsulfatase a | SAMN05421757_10447 | Not Available | Positive | 2412821 - 2414401 | 59460.9 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05421757_10448 | Not Available | Positive | 2414453 - 2415451 | 36101.8 |
| tripartite tricarboxylate transporter tctb family protein | SAMN05421757_10449 | Not Available | Positive | 2415481 - 2416017 | 19041.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
