Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative aldouronate transport system permease protein | SAMN05421757_10420 | Not Available | Negative | 2384863 - 2385852 | 37208.2 |
| multiple sugar transport system atp-binding protein | SAMN05421757_10421 | Not Available | Negative | 2385849 - 2386955 | 39487.0 |
| transcriptional regulator, gntr family | SAMN05421757_10422 | Not Available | Negative | 2386981 - 2387691 | 26188.5 |
| cupin domain-containing protein | SAMN05421757_10423 | Not Available | Positive | 2387804 - 2388127 | 11856.9 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | SAMN05421757_10424 | Not Available | Positive | 2388139 - 2388963 | 29664.1 |
| 2-deoxy-d-gluconate 3-dehydrogenase | SAMN05421757_10425 | Not Available | Positive | 2388960 - 2389688 | 24937.8 |
| l-rhamnulose 1-phosphate aldolase | SAMN05421757_10426 | Not Available | Negative | 2389770 - 2390609 | 31434.9 |
| l-rhamnose isomerase | SAMN05421757_10427 | Not Available | Negative | 2390620 - 2391867 | 46450.0 |
| sugar (pentulose or hexulose) kinase | SAMN05421757_10428 | Not Available | Negative | 2391886 - 2393292 | 49878.0 |
| l-rhamnose mutarotase | SAMN05421757_10429 | Not Available | Negative | 2393289 - 2393603 | 12341.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
