Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap transporter, dctm subunit | SAMN05421757_103493 | Not Available | Positive | 2350883 - 2353237 | 82349.3 |
| catechol 2,3-dioxygenase | SAMN05421757_103494 | Not Available | Negative | 2353301 - 2353687 | 13935.4 |
| arginine-trna-protein transferase | SAMN05421757_103495 | Not Available | Negative | 2353689 - 2354459 | 28746.8 |
| rdd family protein | SAMN05421757_103496 | Not Available | Negative | 2354618 - 2355070 | 16804.9 |
| protein of unknown function | SAMN05421757_103497 | Not Available | Negative | 2355191 - 2355625 | 16436.4 |
| mannose or cellobiose epimerase, n-acyl-d-glucosamine 2-epimerase family | SAMN05421757_103498 | Not Available | Negative | 2355867 - 2357105 | 45753.5 |
| acetylornithine deacetylase | SAMN05421757_103499 | Not Available | Negative | 2357213 - 2358376 | 41093.1 |
| ectoine hydrolase | SAMN05421757_103500 | Not Available | Negative | 2358373 - 2359557 | 43860.2 |
| hypothetical protein | SAMN05421757_103501 | Not Available | Negative | 2359730 - 2359987 | 8788.42 |
| two component transcriptional regulator, luxr family | SAMN05421757_103502 | Not Available | Positive | 2360288 - 2360953 | 23608.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
