Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ca2+-binding protein, rtx toxin-related | SAMN05421757_103483 | Not Available | Positive | 2337684 - 2339873 | 73588.2 |
| hemolysin-type calcium-binding repeat-containing protein | SAMN05421757_103484 | Not Available | Positive | 2340022 - 2341017 | 34353.7 |
| acetolactate synthase, small subunit | SAMN05421757_103485 | Not Available | Negative | 2341070 - 2341633 | 20028.0 |
| protein of unknown function | SAMN05421757_103486 | Not Available | Negative | 2341783 - 2343027 | 43381.8 |
| acetolactate synthase, large subunit | SAMN05421757_103487 | Not Available | Negative | 2343047 - 2344801 | 63633.5 |
| hypothetical protein | SAMN05421757_103488 | Not Available | Negative | 2345119 - 2346123 | 35716.2 |
| two component transcriptional regulator, luxr family | SAMN05421757_103489 | Not Available | Negative | 2346294 - 2346935 | 22900.6 |
| two-component system, narl family, sensor kinase | SAMN05421757_103490 | Not Available | Negative | 2346932 - 2348434 | 55368.4 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN05421757_103491 | Not Available | Positive | 2348761 - 2349843 | 38434.0 |
| hypothetical protein | SAMN05421757_103492 | Not Available | Positive | 2349956 - 2350870 | 34575.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
